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PF07080

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1348 PDB: 2imj_A
    Solved by: NESG Priority Score: 3.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 384 # architectures: 6 # taxonomy ids:281
    FFAS:
      Top FFAS hit in PDB: "2imjA, Hypothetical protein DUF1348" Top FFAS hit in Pfam: "PF11533, Protein of unknown function (DUF3225) "
    GRDB:
      Top significant hit (PDB90): "2imjA, structural genomics, unknown function ; crystal structure of the hypothetical protein (duf1348) from pseudomonas fluorescens, northeast structural genomics target plr14. "
      Top significant hit (PFAM25U): "PF12680, SnoaL-like domain"
    CATH: CATH Domain E-value CATH Node
      3mg1B02 0.00048 3.10.450.50
      3ec9B00 0.0088
    PUBSERVER:
      Publications(s) found: 246
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2imj_A SCOP: d.17.4.23
    FFAS: PDB: 2imj_A SCOP: d.17.4.23
    MGENTHREADER: PDB: 2imj_A SCOP: d.17.4.23
    PRC: PDB: 1nww_A SCOP: d.17.4.8 ECC: 3.3.2.8
    BLASTP: PDB: 2imj_A SCOP: d.17.4.23
    HHBLITS: PDB: 2imj_A SCOP: d.17.4.23
    COMPASS: PDB: 2imj_A SCOP: d.17.4.23
    CSBLAST: PDB: 2imj_A SCOP: d.17.4.23
    HHSEARCH: PDB: 2imj_A SCOP: d.17.4.23

    Topsan Members

    Tag pages as 'PF07080' to appear in this list.

    Name Annotation Author(s)
    2imj

    Summary

    Pfam family PFAM:PF07080 {Protein of unknown function (DUF1348) } with 157 members in NR database and additional 43 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id: TOPSAN:2imj) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1ohpa1 classified as Cystatin-like fold. Profile-profile methods confirm remote homology between this family and superfamily of NTF2-like; Cystatin-like fold.

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