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The Open Protein Structure Annotation Network
PDB Keyword
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PF07005

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1537 PDB: 1yzy_A
    Solved by: NYSGXRC Priority Score: 3.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 916 # architectures: 19 # taxonomy ids:386
    FFAS:
      Top FFAS hit in PDB: "3dqqA, Putative tRNA synthase" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "3dqqA, structural genomics, unknown function ; the crystal structure of the putative trna synthase from salmonella typhimurium lt2 "
    CATH: CATH Domain E-value CATH Node
      1yzyA01 4.90E-13
    PUBSERVER:
      Publications(s) found: 456
      Publications(s) meeting filtering criteria: 5
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 3dqq_A SCOP: predicted c.146.1.1
    PRC: PDB: 1yzy_A SCOP: predicted c.146.1.1
    BLASTP: PDB: 3dqq_A SCOP: predicted c.146.1.1
    HHBLITS: PDB: 3dqq_A SCOP: predicted c.146.1.1
    COMPASS: PDB: 1yzy_A SCOP: predicted c.146.1.1
    COMA: PDB: 3dqq_A SCOP: predicted c.146.1.1
    CSBLAST: PDB: 1yzy_A SCOP: predicted c.146.1.1
    HHSEARCH: PDB: 1yzy_A SCOP: predicted c.146.1.1
    E.coli Annotations
    NCBI: 16130644 PORTECO PORAL: ygbK GeneExpDB: b2737

    Topsan Members

    Tag pages as 'PF07005' to appear in this list.

    Name Annotation Author(s)
    1yzy

    Summary

    Pfam family PFAM:PF07005 {Protein of unknown function, DUF1537 } with 318 members in NR database and additional 123 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:1yzy) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1p5dx2 classified as Ygbk-like fold. (Note: new fold solved by PSI). However, this partial similarity is not sufficient for fold assignment. Thus it is a novel fold.

     

     

    Many sequences match by this family are annotated as Type III effector Hrp-dependent outers, but precise function remains unknown. Based on its domains architectures, such as fusion to sugar aldolases and dehydrogenases it is likely to be carbohydrate binding.

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