.
The Open Protein Structure Annotation Network
PDB Keyword
.

PF06557

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

    HTTP Status: UnableToConnect(0) (click for details)
    HTTP Status: UnableToConnect(0) (click for details)
      

    Resources
    Pfam ID: DUF1122 PDB: 2arh_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 24 # architectures: 2 # taxonomy ids:23
    FFAS:
      Top FFAS hit in PDB: "2arhA, hypothetical protein aq_1966" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2arhA, structural genomics, unknown function ; crystal structure of a hypothetical protein aq_1966 from aquifex aeolicus vf5 "
    CATH: CATH Domain E-value CATH Node
      2arhA01 6.10E-53 3.40.630.30
    PUBSERVER:
      Publications(s) found: 24
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2arh_A SCOP: predicted d.108.1.9
    FFAS: PDB: 2arh_A SCOP: predicted d.108.1.9
    MGENTHREADER: PDB: 2arh_A SCOP: predicted d.108.1.9
    PRC: PDB: 2arh_A SCOP: predicted d.108.1.9
    BLASTP: PDB: 2arh_A SCOP: predicted d.108.1.9
    HHBLITS: PDB: 2arh_A SCOP: predicted d.108.1.9
    COMPASS: PDB: 2arh_A SCOP: predicted d.108.1.9
    CSBLAST: PDB: 2arh_A SCOP: predicted d.108.1.9
    HHSEARCH: PDB: 2arh_A SCOP: predicted d.108.1.9

    Topsan Members

    Tag pages as 'PF06557' to appear in this list.

    Name Annotation Author(s)
    2arh

    Summary

    Pfam family PFAM:PF06557 {Protein of unknown function (DUF1122) } with 13 members in NR database. The first structural representative solved (PDB Id: TOPSAN:2arh) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1q2ya_ classified as Acyl-coa N-acyltransferases (Nat) fold. Based on indirect marginal prediction from FFAS which uses a sequence of another phage tail structure of 3cdd as an intermedadiate then confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1q2ya_' this fold.

    Reviews

    References

     

    No references found.

    Tag page

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch