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PF06439

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1080 PDB: 3h3l_A
    Solved by: non-psi Priority Score: 3.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 1007 # architectures: 108 # taxonomy ids:250
    FFAS:
      Top FFAS hit in PDB: "3osdA, putative glycosyl hydrolase" Top FFAS hit in Pfam: "PF09224, Domain of unknown function (DUF1961) "
    GRDB:
      Top significant hit (PDB90): "3s5qA, hydrolase ; crystal structure of a hypothetical glycosyl hydrolase (bdi_2473) from parabacteroides distasonis atcc 8503 at 1.85 a resolution "
      Top significant hit (PFAM25U): "PF02057, Glycosyl hydrolase family 59"
    CATH: CATH Domain E-value CATH Node
      1z78A00 0.001
      1s0iA02 0.0097 2.60.120.200
    FUNFAM (eval=0.0013 ): Levanbiose-producing levanase -like
    PUBSERVER:
      Publications(s) found: 79
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 3h3l_A SCOP: predicted b.29.1.16
    FFAS: PDB: 3h3l_A SCOP: predicted b.29.1.16
    BLASTP: PDB: 3osd_A
    HHBLITS: PDB: 3h3l_A SCOP: predicted b.29.1.16
    COMPASS: PDB: 1gbg_A SCOP: b.29.1.2 ECC: 3.2.1.73
    COMA: PDB: 3nmb_A SCOP: predicted b.29.1.16 ECC: predicted 3.6.-.-
    CSBLAST: PDB: 3osd_A
    HHSEARCH: PDB: 3osd_A

    Topsan Members

    Tag pages as 'PF06439' to appear in this list.

    Name Annotation Author(s)
    3h3l
    Pfam Update: This protein is now in family PF06439.4 DUF1080 CL0004 Glycosyl hydrolase along with other structures. Gene BDI_2876 from Parabacteroides distasonis atcc 8503 encodes the YP_001304206 pro... haxelrod (8 edits)
    pascual (2 edits)

    Summary

    DUF1080 needs to be substituted by "glycosyl hydrolase".

    Reviews

    References

     

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