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PF06304

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Pfam ID: DUF1048 PDB: 2hh6_A
    Solved by: JCSG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 198 # architectures: 5 # taxonomy ids:69
    FFAS:
      Top FFAS hit in PDB: "2hh6A, BH3980 protein" Top FFAS hit in Pfam: "PF06570, Protein of unknown function (DUF1129) "
    GRDB:
      Top significant hit (PDB90): "2hh6A, structural genomics, unknown function ; crystal structure of bh3980 (10176605) from bacillus halodurans at 2.04 a resolution "
      Top significant hit (PFAM25U): "PF06570, Protein of unknown function (DUF1129)"
    CATH: CATH Domain E-value CATH Node
      2o3lA00 1.50E-26 1.10.1900.10
    PUBSERVER:
      Publications(s) found: 65
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2hh6_A
    FFAS: PDB: 2hh6_A
    MGENTHREADER: PDB: 2hh6_A
    BLASTP: PDB: 2o3l_A SCOP: predicted a.126.1.1
    HHBLITS: PDB: 2hh6_A
    COMPASS: PDB: 2hh6_A
    CSBLAST: PDB: 2hh6_A
    HHSEARCH: PDB: 2hh6_A

    Topsan Members

    Tag pages as 'PF06304' to appear in this list.

    Name Annotation Author(s)
    2hh6
    The gene BH3980 from Bacillus halodurans probably encodes the NP_244848 protein, a transcriptional regulator from the DUF1048 group (PF06304), homologous to PadR 3HHH (sequence identity with YP_003354... pascual (3 edits)
    anton (1 edits)
    tinab (1 edits)

    Summary

    Pfam family PFAM:PF06304 {Protein of unknown function (DUF1048) } with 29 members in NR database. The first structural representative solved (PDB Id: TOPSAN:2hh6) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1gpja1 classified as Glutamyl tRNA-reductase dimerization domain fold. (Note: additional/lacking secondary structure elements). However, no sequence similarity to this fold has been detected.

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