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The Open Protein Structure Annotation Network
PDB Keyword
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PF06078

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    3. 3. References

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    Resources
    Pfam ID: DUF937 PDB: 1z67_A
    Solved by: MCSG Priority Score: 3.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 489 # architectures: 7 # taxonomy ids:289
    FFAS:
      Top FFAS hit in PDB: "1z67A, hypothetical protein S4005" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1z67A, structural genomics, unknown function ; hypothetical protein s4005 from shigella flexneri "
    CATH: CATH Domain E-value CATH Node
      1z67A00 1.40E-20 1.10.10.690
    PUBSERVER:
      Publications(s) found: 323
      Publications(s) meeting filtering criteria: 2
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1z67_A SCOP: predicted a.259.1.1
    FFAS: PDB: 1z67_A SCOP: predicted a.259.1.1
    MGENTHREADER: PDB: 1z67_A SCOP: predicted a.259.1.1
    PRC: PDB: 1z67_A SCOP: predicted a.259.1.1
    BLASTP: PDB: 1z67_A SCOP: predicted a.259.1.1
    HHBLITS: PDB: 1z67_A SCOP: predicted a.259.1.1
    COMPASS: PDB: 1z67_A SCOP: predicted a.259.1.1
    CSBLAST: PDB: 1z67_A SCOP: predicted a.259.1.1
    HHSEARCH: PDB: 1z67_A SCOP: predicted a.259.1.1
    E.coli Annotations
    NCBI: 90111642 PORTECO PORAL: yidB GeneExpDB: b3698

    Topsan Members

    Tag pages as 'PF06078' to appear in this list.

    Name Annotation Author(s)
    1z67

    Summary

    Pfam family PFAM:PF06078 {Bacterial protein of unknown function (DUF937)} with 114 members in NR database and additional 19 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:1z67) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d2cqna1 classified as Yidb-like fold. (Note: new fold solved by PSI). However, this partial similarity is not sufficient for fold assignment. Thus it is a novel fold. Based on sequence and structure analysis/ original paper one can hypothesize that this family is may be a nucleic acid binding protein

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