The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

    HTTP Status: UnableToConnect(0) (click for details)
    HTTP Status: UnableToConnect(0) (click for details)

    Pfam ID: DUF905 PDB: 2hjj_A
    Solved by: NESG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
      # sequence matches: 152 # architectures: 4 # taxonomy ids:19
      Top FFAS hit in PDB: "2hjjA, Hypothetical protein ykfF" No significant hits in Pfam.
      Top significant hit (PDB90): "2hjjA, structural genomics, unknown function ; solution nmr structure of protein ykff from escherichia coli. northeast structural genomics target er397. "
    CATH: CATH Domain E-value CATH Node
      2hjjA00 8.50E-30
      Publications(s) found: 243
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    FFAS: PDB: 2hjj_A
    PHYRE: PDB: 2hjj_A
    HHBLITS: PDB: 2hjj_A
    COMPASS: PDB: 2hjj_A
    COMA: PDB: 2hjj_A
    HHSEARCH: PDB: 2hjj_A
    E.coli Annotations
    NCBI: 16128234 PORTECO PORAL: ykfF GeneExpDB: b0249

    Topsan Members

    Tag pages as 'PF06006' to appear in this list.

    Name Annotation Author(s)


    Pfam family PFAM:PF06006 {Bacterial protein of unknown function (DUF905)} with 50 members in NR database and additional 2 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2hjj) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1z1ba1 classified as DNA-binding domain fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds nucleic acids




    No references found.

    Tag page

    Files (0)

    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch