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PDB Keyword
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PF06006

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF905 PDB: 2hjj_A
    Solved by: NESG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 152 # architectures: 4 # taxonomy ids:19
    FFAS:
      Top FFAS hit in PDB: "2hjjA, Hypothetical protein ykfF" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2hjjA, structural genomics, unknown function ; solution nmr structure of protein ykff from escherichia coli. northeast structural genomics target er397. "
    CATH: CATH Domain E-value CATH Node
      2hjjA00 8.50E-30 3.30.160.130
    PUBSERVER:
      Publications(s) found: 243
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    FFAS: PDB: 2hjj_A
    PHYRE: PDB: 2hjj_A
    MGENTHREADER: PDB: 2hjj_A
    HHBLITS: PDB: 2hjj_A
    COMPASS: PDB: 2hjj_A
    COMA: PDB: 2hjj_A
    HHSEARCH: PDB: 2hjj_A
    E.coli Annotations
    NCBI: 16128234 PORTECO PORAL: ykfF GeneExpDB: b0249

    Topsan Members

    Tag pages as 'PF06006' to appear in this list.

    Name Annotation Author(s)
    2hjj

    Summary

    Pfam family PFAM:PF06006 {Bacterial protein of unknown function (DUF905)} with 50 members in NR database and additional 2 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2hjj) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1z1ba1 classified as DNA-binding domain fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds nucleic acids

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