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PF05913

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF871 PDB: 1x7f_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 640 # architectures: 2 # taxonomy ids:157
    FFAS:
      Top FFAS hit in PDB: "1x7fA, outer surface protein" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1x7fA, structural genomics, unknown function ; crystal structure of an uncharacterized b. cereus protein "
      Top significant hit (PFAM25U): "PF10566, Glycoside hydrolase 97"
    CATH: CATH Domain E-value CATH Node
      1eh9A01 0.0071 3.20.20.80
      2p0oA02 2.50E-31 2.40.100.10
      2p0oA01 3.00E-75 3.20.20.70
    PUBSERVER:
      Publications(s) found: 217
      Publications(s) meeting filtering criteria: 3
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2p0o_A SCOP: predicted c.1.8
    FFAS: PDB: 1x7f_A SCOP: predicted c.1.8
    MGENTHREADER: PDB: 2p0o_A SCOP: predicted c.1.8
    PRC: PDB: 1x7f_A SCOP: predicted c.1.8
    SPARKS: PDB: 1x7f_A SCOP: predicted c.1.8
    BLASTP: PDB: 2p0o_A SCOP: predicted c.1.8
    HHBLITS: PDB: 1x7f_A SCOP: predicted c.1.8
    COMPASS: PDB: 1x7f_A SCOP: predicted c.1.8
    COMA: PDB: 1x7f_A SCOP: predicted c.1.8
    CSBLAST: PDB: 2p0o_A SCOP: predicted c.1.8
    HHSEARCH: PDB: 1x7f_A SCOP: predicted c.1.8

    Topsan Members

    Tag pages as 'PF05913' to appear in this list.

    Name Annotation Author(s)
    1x7f

    Summary

    Pfam family PFAM:PF05913 {Bacterial protein of unknown function (DUF871)} with 131 members in NR database and additional 3 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:1x7f) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1q6oa_ classified as Two domains: TIM beta/alpha-barrel and Cyclophilin-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1q6oa_' this fold.

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