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PF05638

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    3. 3. References

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    Resources
    Pfam ID: DUF796 PDB: 1y12_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 1037 # architectures: 6 # taxonomy ids:276
    FFAS:
      Top FFAS hit in PDB: "3eaaA, EvpC" Top FFAS hit in Pfam: "PF06841, T4-like virus tail tube protein gp19 "
    GRDB:
      Top significant hit (PDB90): "1y12A, structural genomics, unknown function ; structure of a hemolysin-coregulated protein from pseudomonas aeruginosa "
      Top significant hit (PFAM25U): "PF06841, T4-like virus tail tube protein gp19"
    CATH: CATH Domain E-value CATH Node
      3eaaB00 2.00E-46
      1y12A00 1.50E-45 2.30.110.20
    PUBSERVER:
      Publications(s) found: 439
      Publications(s) meeting filtering criteria: 17
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 3eaa_A SCOP: predicted b.157.1.1
    FFAS: PDB: 3he1_A
    MGENTHREADER: PDB: 1y12_A SCOP: predicted b.157.1.1
    PRC: PDB: 1y12_A SCOP: predicted b.157.1.1
    SPARKS: PDB: 1y12_A SCOP: predicted b.157.1.1
    BLASTP: PDB: 1y12_A SCOP: predicted b.157.1.1
    HHBLITS: PDB: 3he1_A
    COMPASS: PDB: 1y12_A SCOP: predicted b.157.1.1
    CSBLAST: PDB: 3eaa_A SCOP: predicted b.157.1.1
    HHSEARCH: PDB: 3he1_A
    E.coli Annotations
    NCBI: 16131314 PORTECO PORAL: yhhZ GeneExpDB: b3442

    Topsan Members

    Tag pages as 'PF05638' to appear in this list.

    Name Annotation Author(s)
    1y12

    Summary

    Pfam family
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    {Protein of unknown function (DUF796) } with 499 members in NR database and additional 76 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id:
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    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Hcp1-like fold. (Note: new fold solved by PSI). However, this partial similarity is not sufficient for fold assignment. Thus it is a novel fold. Based on experiment/ original paper one can hypothesize that this family is part of protein secretion apparatus encoded by virulence locus in P.aeruginosa Hcp1 associates with proteins on both faces in order to build a channel through which other macromolecules could be transported

    Reviews

    References

     

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