.
The Open Protein Structure Annotation Network
PDB Keyword
.

PF04919

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

    HTTP Status: UnableToConnect(0) (click for details)
    HTTP Status: UnableToConnect(0) (click for details)
      

    Resources
    Pfam ID: DUF655 PDB: 2i5h_A
    Solved by: NYSGXRC Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 142 # architectures: 8 # taxonomy ids:115
    FFAS:
      Top FFAS hit in PDB: "2i5hA, Hypothetical protein AF1531" Top FFAS hit in Pfam: "PF06514, Photosystem II 12 kDa extrinsic protein (PsbU) "
    GRDB:
      Top significant hit (PDB90): "2i5hA, structural genomics, unknown function ; crystal structure of a hypothetical protein af1531 from archaeoglobus fulgidus "
      Top significant hit (PFAM25U): "PF12836, Helix-hairpin-helix motif"
    CATH: CATH Domain E-value CATH Node
      3bzcA04 0.0012 1.10.150.310
      2i5hA02 6.70E-27 1.10.150.280
      2i5hA01 1.70E-14 2.40.50.140
    FUNFAM (eval=0.0000029 ): DNA polymerase III subunit alpha -like
    PUBSERVER:
      Publications(s) found: 110
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2i5h_A
    FFAS: PDB: 2i5h_A
    MGENTHREADER: PDB: 2i5h_A
    BLASTP: PDB: 2i5h_A
    HHBLITS: PDB: 2i5h_A
    COMPASS: PDB: 2i5h_A
    CSBLAST: PDB: 2i5h_A
    HHSEARCH: PDB: 2i5h_A

    Topsan Members

    Tag pages as 'PF04919' to appear in this list.

    Name Annotation Author(s)
    2i5h

    Summary

    Pfam family PFAM:PF04919 {Protein of unknown function, DUF655 } with 96 members in NR database and additional 52 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:2i5h) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1wg8a1 classified as OB-fold, SAM domain-like fold fold. Profile-profile methods confirm remote homology between this family and superfamily of SAM domain-like fold.

    Reviews

    References

     

    No references found.

    Tag page

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch