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PF04379

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF525 PDB: 1tza_A
    Solved by: NESG Priority Score: 4.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 769 # architectures: 9 # taxonomy ids:533
    FFAS:
      Top FFAS hit in PDB: "1xvsA, Protein apaG" Top FFAS hit in Pfam: "PF14263, Domain of unknown function (DUF4354) "
    GRDB:
      Top significant hit (PDB90): "1xq4A, structural genomics, unknown function ; crystal structure of the putative apaa protein from bordetella pertussis, northeast structural genomics target ber40 "
    CATH: CATH Domain E-value CATH Node
      1xvsA00 1.30E-35 2.60.40.1470
    FUNFAM (eval=0 ): Temporarily assigned gene name protein 307 -like
    PUBSERVER:
      Publications(s) found: 714
      Publications(s) meeting filtering criteria: 21
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1xq4_A SCOP: b.1.23.1
    FFAS: PDB: 1tza_A SCOP: b.1.23.1
    MGENTHREADER: PDB: 2f1e_A SCOP: predicted b.1.23.1
    PRC: PDB: 1tza_A SCOP: b.1.23.1
    SPARKS: PDB: 1tza_A SCOP: b.1.23.1
    BLASTP: PDB: 1xvs_A SCOP: b.1.23.1
    HHBLITS: PDB: 2f1e_A SCOP: predicted b.1.23.1
    COMPASS: PDB: 1tza_A SCOP: b.1.23.1
    CSBLAST: PDB: 1xq4_A SCOP: b.1.23.1
    HHSEARCH: PDB: 1xq4_A SCOP: b.1.23.1
    E.coli Annotations
    NCBI: 16128044 PORTECO PORAL: apaG GeneExpDB: b0050

    Topsan Members

    Tag pages as 'PF04379' to appear in this list.

    Name Annotation Author(s)
    1tza

    Summary

    Pfam family

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    {Protein of unknown function (DUF525) } with 837 members in NR database and additional 530 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id:
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    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Immunoglobulin-like beta-sandwich fold. Based on indirect marginal prediction from FFAS then confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1vjja3' this fold.

    On the one side of beta-sheet highly specific conserved residues forming unusual wide bounce, likely the recognition site for small ligand. Docking can be applied to check the potential partner.

    Reviews

    References

     

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