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PF04359

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    3. 3. References

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    Resources
    Pfam ID: DUF493 PDB: 1rwu_A
    Solved by: NESG Priority Score: 3.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 622 # architectures: 3 # taxonomy ids:427
    FFAS:
      Top FFAS hit in PDB: "1rwuA, Hypothetical UPF0250 protein ybeD" Top FFAS hit in Pfam: "PF13291, ACT domain "
    GRDB:
      Top significant hit (PDB90): "1rwuA, structural genomics, unknown function ; solution structure of conserved protein ybed from e. coli "
      Top significant hit (PFAM25U): "PF13291, ACT domain"
    CATH: CATH Domain E-value CATH Node
      1rwuA00 1.80E-26 3.30.70.1460
      2ko1B00 0.0015
    PUBSERVER:
      Publications(s) found: 588
      Publications(s) meeting filtering criteria: 5
    GeneSilico Metaserver: (Login and password: Jamboree)
    FFAS: PDB: 1rwu_A SCOP: d.58.54.1
    PHYRE: PDB: 1rwu_A SCOP: d.58.54.1
    MGENTHREADER: PDB: 2joq_A SCOP: predicted d.58.18.6
    PRC: PDB: 1rwu_A SCOP: d.58.54.1
    SPARKS: PDB: 1rwu_A SCOP: d.58.54.1
    HHBLITS: PDB: 1rwu_A SCOP: d.58.54.1
    COMPASS: PDB: 1rwu_A SCOP: d.58.54.1
    HHSEARCH: PDB: 1rwu_A SCOP: d.58.54.1
    E.coli Annotations
    NCBI: 16128614 PORTECO PORAL: ybeD GeneExpDB: b0631

    Topsan Members

    Tag pages as 'PF04359' to appear in this list.

    Name Annotation Author(s)
    1rwu

    Summary

    Pfam family
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    {Protein of unknown function (DUF493) } with 339 members in NR database and additional 127 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id:
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    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Ferredoxin-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1q5ya_' this fold. Based on sequence and structure analysis/ original paper one can hypothesize that this family is plays a role in the allosteric regulation of lipoic acid biosynthesis or the glycine cleavage system.

    Reviews

    References

     

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