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PF04340

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF484 PDB: 3e98_A
    Solved by: JCSG Priority Score: 4.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 531 # architectures: 5 # taxonomy ids:341
    FFAS:
      Top FFAS hit in PDB: "3e98A, GAF Domain of Unknown Function" Top FFAS hit in Pfam: "PF13185, GAF domain "
    GRDB:
      Top significant hit (PDB90): "3e98A, structural genomics, unknown function ; crystal structure of a gaf domain with unknown function (np_253966.1) from pseudomonas aeruginosa at 2.43 a resolution "
      Top significant hit (PFAM25U): "PF13492, GAF domain"
    CATH: CATH Domain E-value CATH Node
      2vjwA00 0.0049
      1mc0A01 0.00044 3.30.450.40
    PUBSERVER:
      Publications(s) found: 497
      Publications(s) meeting filtering criteria: 7
    GeneSilico Metaserver: (Login and password: Jamboree)
    FFAS: PDB: 3e98_A
    PHYRE: PDB: 2e4s_A
    HHBLITS: PDB: 3ci6_A SCOP: predicted d.110.2.1 ECC: 2.7.3.9
    COMPASS: PDB: 1mc0_A SCOP: predicted d.110.2 ECC: 3.1.4.35
    COMA: PDB: 3e98_A
    HHSEARCH: PDB: 3e98_A
    E.coli Annotations
    NCBI: 16131662 PORTECO PORAL: yigA GeneExpDB: b3810

    Topsan Members

    Tag pages as 'PF04340' to appear in this list.

    Name Annotation Author(s)
    3e98
    Gene PA5279 from Pseudomonas aeruginosa encodes the NP_253966 protein, belonging to the DUF484 (PF04340). Its genomic context shows a possible functional link (score 0.85) with dapF, a diaminopimelate... qxu (4 edits)
    pascual (4 edits)
    sefcovic (3 edits)

    Summary

    The structure of PDB:3E98 show strong similarity to the GAF domain. The function of this domain as GAF is supported by the domain architecutre,  GGDEF (cyclic diguanylate cyclase).http://en.wikipedia.org/w/index.php?title=GAF_domain

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