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PF04297

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: UPF0122 PDB: 1s7o_A
    Solved by: BSGC Priority Score: 3.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 617 # architectures: 16 # taxonomy ids:404
    FFAS:
      Top FFAS hit in PDB: "1s7oA, Hypothetical UPF0122 protein SPy1201/SpyM3_08" Top FFAS hit in Pfam: "PF07638, ECF sigma factor "
    GRDB:
      Top significant hit (PDB90): "1s7oA, structural genomics, unknown function ; crystal structure of putative dna binding protein sp_1288 from streptococcus pygenes "
      Top significant hit (PFAM25U): "PF07638, ECF sigma factor"
    CATH: CATH Domain E-value CATH Node
      2w53B00 0.01
      2vkvA01 0.0076 1.10.10.60
      1j5yA01 0.009 1.10.10.10
      3bhqA00 0.01 1.10.357.10
    FUNFAM (eval=0.000000018 ): RNA polymerase sigma factor for flagellar operon domain 2 -like
    PUBSERVER:
      Publications(s) found: 353
      Publications(s) meeting filtering criteria: 7
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1s7o_A SCOP: a.4.13.3
    FFAS: PDB: 1s7o_A SCOP: a.4.13.3
    MGENTHREADER: PDB: 1xsv_A SCOP: a.4.13.3
    PRC: PDB: 1xsv_A SCOP: a.4.13.3
    SPARKS: PDB: 1s7o_A SCOP: a.4.13.3
    BLASTP: PDB: 1s7o_A SCOP: a.4.13.3
    HHBLITS: PDB: 1r1u_A SCOP: a.4.5.5
    COMPASS: PDB: 1s7o_A SCOP: a.4.13.3
    COMA: PDB: 1s7o_A SCOP: a.4.13.3
    CSBLAST: PDB: 1xsv_A SCOP: a.4.13.3
    HHSEARCH: PDB: 1xsv_A SCOP: a.4.13.3

    Topsan Members

    Tag pages as 'PF04297' to appear in this list.

    No TOPSAN member(s) found.

    Summary

    Sequence and structural similarities strongly indicate that this is a HTH domain, domain 4 of bacterial σ Factors (19836336). This should be renamed to HTH_#, but the function is only inferred.

    Reviews

    References

     

    No references found.

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