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The Open Protein Structure Annotation Network
PDB Keyword
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PF04242

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF424 PDB: 2qya_A
    Solved by: NYSGXRC Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 119 # architectures: 1 # taxonomy ids:102
    FFAS:
      Top FFAS hit in PDB: "2qyaA, Uncharacterized conserved protein" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2qyaA, structural genomics, unknown function ; crystal structure of an uncharacterized conserved protein from methanopyrus kandleri "
    CATH: CATH Domain E-value CATH Node
      2qyaA01 1.90E-28 3.30.1860.10
    PUBSERVER:
      Publications(s) found: 79
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2qya_A
    FFAS: PDB: 2qya_A
    MGENTHREADER: PDB: 2qya_A
    BLASTP: PDB: 2qya_A
    HHBLITS: PDB: 2qya_A
    COMPASS: PDB: 2qya_A
    CSBLAST: PDB: 2qya_A
    HHSEARCH: PDB: 2qya_A

    Topsan Members

    Tag pages as 'PF04242' to appear in this list.

    Name Annotation Author(s)
    2qya

    Summary

    Pfam family PFAM:PF04242 {Protein of unknown function (DUF424)} with 49 members in NR database and additional 20 members in the metagenomic datasets is represented in Archaea. The first structural representative solved (PDB Id: TOPSAN:2qya) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1tiga_ classified as IF3-like fold. (Note: additional/lacking secondary structure elements). However, no sequence similarity to this fold has been detected.

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