.
The Open Protein Structure Annotation Network
PDB Keyword
.

PF02698

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)

    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)

    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
      

    Resources
    Pfam ID: DUF218 PDB: 3ca8_A
    Solved by: S2F Priority Score: 3.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 3322 # architectures: 18 # taxonomy ids:1065
    FFAS:
      Top FFAS hit in PDB: "3ca8A, Protein ydcF" Top FFAS hit in Pfam: "PF05728, Uncharacterised protein family (UPF0227) "
    GRDB:
      Top significant hit (PDB90): "3ca8A, structural genomics, unknown function ; crystal structure of escherichia coli ydcf, an s-adenosyl-l- methionine utilizing enzyme "
      Top significant hit (PFAM25U): "PF00532, Periplasmic binding proteins and sugar binding domain of LacI family"
    CATH: CATH Domain E-value CATH Node
      3ca8A02 6.20E-27 3.40.50.620
    FUNFAM (eval=0 ): Uncharacterized protein C57A10.07 -like
    PUBSERVER:
      Publications(s) found: 1089
      Publications(s) meeting filtering criteria: 19
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 3ca8_A SCOP: predicted c.25.1.1
    FFAS: PDB: 3ca8_A SCOP: predicted c.25.1.1
    MGENTHREADER: PDB: 3ca8_A SCOP: predicted c.25.1.1
    HHBLITS: PDB: 3ca8_A SCOP: predicted c.25.1.1
    COMPASS: PDB: 3ca8_A SCOP: predicted c.25.1.1
    CSBLAST: PDB: 3ca8_A SCOP: predicted c.25.1.1
    HHSEARCH: PDB: 3ca8_A SCOP: predicted c.25.1.1
    E.coli Annotations
    NCBI: 16128887 PORTECO PORAL: ycbC GeneExpDB: b0920

    Topsan Members

    Tag pages as 'PF02698' to appear in this list.

    No TOPSAN member(s) found.

    Summary

    A member of the UspA superfamily of small molecular binding proteins  (http://www.ncbi.nlm.nih.gov/pubmed/12012333). These domains contain a version of the Rossmannoid fold called the HUP superclass (http://www.ncbi.nlm.nih.gov/pubmed/11292341). They are predicted to either bind small molecules like nucleotides or hydrolyze nucleotides such as ATP and AdoMet. Examples of this version of the UspA superfamily have been show to bind AdoMet (PMID:18393394).

    Reviews

    References

     

    No references found.

    Tag page

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch