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PDB Keyword
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PF02130

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    3. 3. References

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    Resources
    Pfam ID: UPF0054 PDB: 1oz9_A
    Solved by: BSGC Priority Score: 4.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 2147 # architectures: 11 # taxonomy ids:1474
    FFAS:
      Top FFAS hit in PDB: "1oz9A, Hypothetical protein AQ_1354" Top FFAS hit in Pfam: "PF11350, Protein of unknown function (DUF3152) "
    GRDB:
      Top significant hit (PDB90): "1xaxA, structural genomics, unknown function ; nmr structure of hi0004, a putative essential gene product from haemophilus influenzae "
    CATH: CATH Domain E-value CATH Node
      1xaxA00 3.40E-39
      1tviA00 1.30E-37 3.40.390.30
    FUNFAM (eval=0 ): Putative metalloprotease C21orf57 homolog -like
    PUBSERVER:
      Publications(s) found: 1550
      Publications(s) meeting filtering criteria: 18
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1oz9_A SCOP: d.92.1.15
    FFAS: PDB: 1xm5_A SCOP: d.92.1.15
    MGENTHREADER: PDB: 1tvi_A SCOP: d.92.1.15
    PRC: PDB: 1xm5_A SCOP: d.92.1.15
    SPARKS: PDB: 1xm5_A SCOP: d.92.1.15
    BLASTP: PDB: 1xm5_A SCOP: d.92.1.15
    HHBLITS: PDB: 1xm5_A SCOP: d.92.1.15
    COMPASS: PDB: 1xax_A
    CSBLAST: PDB: 1oz9_A SCOP: d.92.1.15
    HHSEARCH: PDB: 1xm5_A SCOP: d.92.1.15
    E.coli Annotations
    NCBI: 16128642 PORTECO PORAL: ybeY GeneExpDB: b0659

    Topsan Members

    Tag pages as 'PF02130' to appear in this list.

    Name Annotation Author(s)
    1oz9

    Summary

    Based on the results in manuscripts PMID 20807199, PMID 20639334, PMID 21325267and structural and sequence conservations, it can be predicted to be a zinc-dependent RNA processing hydrolase, implicated in processing of 16S RNA, 23S RNA, 5S RNA and sRNAs in bacteria. They share a common fold with zincin-like metallopeptidases but lacks a conserved glutamate found in the latter and instead has an additional conserved histidine unique to this family. These domains are present in eukaryotes and bacteria. While predominantly appearing as single domain architectures, they tend to appear in combination with Hydrolyse_3 domains in Viridiplantae.

    Reviews

    References

     

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