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PF01995

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF128 PDB: 3nek_A
    Solved by: NYSGXRC Priority Score: 2.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 73 # architectures: 3 # taxonomy ids:44
    FFAS:
      Top FFAS hit in PDB: "3nekA, nitrogen repressor-like protein MJ0159" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2qyxA, structural genomics, unknown function ; crystal structure of uncharacterized protein mj0159 from methanocaldococcus jannaschii "
      Top significant hit (PFAM25U): "PF07286, Protein of unknown function (DUF1445)"
    CATH: CATH Domain E-value CATH Node
      3nekB01 2.60E-34 3.30.70.1360
    PUBSERVER:
      Publications(s) found: 32
      Publications(s) meeting filtering criteria: 2
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 3nek_A
    FFAS: PDB: 3nek_A
    MGENTHREADER: PDB: 2qyx_A
    BLASTP: PDB: 3nek_A
    HHBLITS: PDB: 2qyx_A
    COMPASS: PDB: 2qyx_A
    COMA: PDB: 3nek_A
    CSBLAST: PDB: 3nek_A
    HHSEARCH: PDB: 2qyx_A

    Topsan Members

    Tag pages as 'PF01995' to appear in this list.

    Name Annotation Author(s)
    3nek

    Summary

    Pfam family
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    {Domain of unknown function DUF128} with 48 members in NR database and additional 4 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id:
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Ferredoxin-like fold. (Note: duplication). However, no sequence similarity to this fold has been detected.

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