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The Open Protein Structure Annotation Network
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PF01906

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Topsan Members

    Tag pages as 'PF01906' to appear in this list.

    Name Annotation Author(s)
    1y2i

    Summary

    Pfam family PFAM:PF01906 {Domain of unknown function DUF74 } with 756 members in NR database and additional 468 members in the metagenomic datasets is represented in Archaea, Bacteria, and Eukaryota.

    The first structural representative solved (PDB Id: TOPSAN:1y2i) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1xrsb2 classified as dodecin subunit-like fold, YbjQ-like (super)family. However, no sequence similarity to this fold has been detected. A DALI search provides hits with other DUF74 structures like 2gtc (Z=17), and 1vr4 (Z=15). The next hit is with a Se-binding protein 2jz7 (Z=6.5). A BLAST search with the YbjQ amino acid sequence hits with an e-val=4e-44 (64% seq. id.; 1% gaps) the Roseobacter sp. trkA gene, a component of the peripheral membrane potassium transporter [Ref].

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